DBNascent | Samples

SRR5084317 Sample ID 2213

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP	SRP094701
Samples	SRR5084317

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	23 Mb
Stranded gene read counts	TXT file	904 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	208 Kb
dREG bidirectional regions	BED file	57 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	12,882,369
Duplication proportion	0.73477
Proportion reads mapped	0.7557
Exon/intron ratio	3.60366
Unique read proportion	0.26537

**Bidirectionals**
Total # Tfit bidirectionals	2469
# Promoter Tfit bidirectionals	683
# Intronic Tfit bidirectionals	786
# Intergenic Tfit bidirectionals	48
Total # dREG bidirectionals	1336
# Promoter dREG bidirectionals	490
# Intronic dREG bidirectionals	368
# Intergenic dREG bidirectionals	266
Part of Tfit master merge?	True
Part of dREG master merge?	True