DBNascent | Samples

SRR5084318 Sample ID 2215

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP accession	SRP094701
GEO accession	GSE90988
Samples	SRR5084318

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	19 Mb
Stranded gene read counts	TXT file	901 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	126 Kb
dREG bidirectional regions	BED file	36 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	10,889,581
Duplication proportion	0.78
Proportion reads mapped	0.761
Exon/intron ratio	2.63968
Unique read proportion	0.21307

**Bidirectionals**
Total # Tfit bidirectionals	1497
# Promoter Tfit bidirectionals	400
# Intronic Tfit bidirectionals	484
# Intergenic Tfit bidirectionals	31
Total # dREG bidirectionals	830
# Promoter dREG bidirectionals	250
# Intronic dREG bidirectionals	252
# Intergenic dREG bidirectionals	143
Part of Tfit master merge?	True
Part of dREG master merge?	True