DBNascent | Samples

SRR5084319 Sample ID 2215

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP	SRP094701
Samples	SRR5084319

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	30 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	298 Kb
dREG bidirectional regions	BED file	87 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	20,396,742
Duplication proportion	0.7809
Proportion reads mapped	0.7545
Exon/intron ratio	2.90126
Unique read proportion	0.24549

**Bidirectionals**
Total # Tfit bidirectionals	3527
# Promoter Tfit bidirectionals	817
# Intronic Tfit bidirectionals	1346
# Intergenic Tfit bidirectionals	110
Total # dREG bidirectionals	2033
# Promoter dREG bidirectionals	609
# Intronic dREG bidirectionals	640
# Intergenic dREG bidirectionals	323
Part of Tfit master merge?	True
Part of dREG master merge?	True