DBNascent | Samples

SRR5084320 Sample ID 2216

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP	SRP094701
Samples	SRR5084320

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	23 Mb
Stranded gene read counts	TXT file	904 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	202 Kb
dREG bidirectional regions	BED file	58 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	14,837,832
Duplication proportion	0.79054
Proportion reads mapped	0.7437
Exon/intron ratio	3.09295
Unique read proportion	0.21273

**Bidirectionals**
Total # Tfit bidirectionals	2404
# Promoter Tfit bidirectionals	629
# Intronic Tfit bidirectionals	773
# Intergenic Tfit bidirectionals	79
Total # dREG bidirectionals	1352
# Promoter dREG bidirectionals	446
# Intronic dREG bidirectionals	384
# Intergenic dREG bidirectionals	225
Part of Tfit master merge?	True
Part of dREG master merge?	True