DBNascent | Samples

SRR5084322 Sample ID 2218

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP	SRP094701
Samples	SRR5084322

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	412 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	20,847,713
Duplication proportion	0.64759
Proportion reads mapped	0.8152
Exon/intron ratio	1.60901
Unique read proportion	0.48249

**Bidirectionals**
Total # Tfit bidirectionals	13275
# Promoter Tfit bidirectionals	3816
# Intronic Tfit bidirectionals	5545
# Intergenic Tfit bidirectionals	1461
Total # dREG bidirectionals	9587
# Promoter dREG bidirectionals	4111
# Intronic dREG bidirectionals	2803
# Intergenic dREG bidirectionals	1277
Part of Tfit master merge?	True
Part of dREG master merge?	True