DBNascent | Samples

SRR5084323 Sample ID 2219

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP	SRP094701
Samples	SRR5084323

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	52 Mb
Stranded gene read counts	TXT file	920 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	423 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	23,985,913
Duplication proportion	0.69774
Proportion reads mapped	0.8151
Exon/intron ratio	1.76399
Unique read proportion	0.4601

**Bidirectionals**
Total # Tfit bidirectionals	14098
# Promoter Tfit bidirectionals	4345
# Intronic Tfit bidirectionals	5581
# Intergenic Tfit bidirectionals	1539
Total # dREG bidirectionals	9839
# Promoter dREG bidirectionals	4279
# Intronic dREG bidirectionals	2828
# Intergenic dREG bidirectionals	1329
Part of Tfit master merge?	True
Part of dREG master merge?	True