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SRR5084324 Sample ID 2221
| Paper identifier | Schaukowitch2017intrinsic |
| SRP accession | SRP094701 |
| GEO accession | GSE90988 |
| Samples | SRR5084324 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 58 Mb |
| Stranded gene read counts | TXT file | 921 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 544 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | cortical neuron |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | tetrodotoxin | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 25,490,525 |
| Duplication proportion | 0.67318 |
| Proportion reads mapped | 0.8254 |
| Exon/intron ratio | 1.65972 |
| Unique read proportion | 0.50332 |
| Total # Tfit bidirectionals | 17432 |
| # Promoter Tfit bidirectionals | 5478 |
| # Intronic Tfit bidirectionals | 7074 |
| # Intergenic Tfit bidirectionals | 2142 |
| Total # dREG bidirectionals | 12650 |
| # Promoter dREG bidirectionals | 5547 |
| # Intronic dREG bidirectionals | 3648 |
| # Intergenic dREG bidirectionals | 1760 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |