DBNascent | Samples

SRR5084324 Sample ID 2221

**Data sources**
Paper identifier	Schaukowitch2017intrinsic
SRP accession	SRP094701
GEO accession	GSE90988
Samples	SRR5084324

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	544 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	tetrodotoxin	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	25,490,525
Duplication proportion	0.67318
Proportion reads mapped	0.8254
Exon/intron ratio	1.65972
Unique read proportion	0.50332

**Bidirectionals**
Total # Tfit bidirectionals	17432
# Promoter Tfit bidirectionals	5478
# Intronic Tfit bidirectionals	7074
# Intergenic Tfit bidirectionals	2142
Total # dREG bidirectionals	12650
# Promoter dREG bidirectionals	5547
# Intronic dREG bidirectionals	3648
# Intergenic dREG bidirectionals	1760
Part of Tfit master merge?	True
Part of dREG master merge?	True