DBNascent | Samples

SRR5085737 Sample ID 2670

**Data sources**
Paper identifier	Williamson2017uv
SRP accession	SRP094802
GEO accession	GSE91010
Samples	SRR5085737

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	199 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MRC5VA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	DRB (100 microM)	-220 min	-10 min	210 min
treatment	ultraviolet C (15 J/m^2)	-601 s	-600 s	1 s

**Extended notes**
Pipeline info and software versions
Sample notes	No documented irradiation duration, arbitrarily called 1 second
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	4
Raw read length	51
Read depth after trimming	56,073,375
Duplication proportion	0.37113
Proportion reads mapped	0.8961
Exon/intron ratio	8.32506
Unique read proportion	0.79155

**Bidirectionals**
Total # Tfit bidirectionals	62981
# Promoter Tfit bidirectionals	12308
# Intronic Tfit bidirectionals	29641
# Intergenic Tfit bidirectionals	14311
Total # dREG bidirectionals	37150
# Promoter dREG bidirectionals	6047
# Intronic dREG bidirectionals	19609
# Intergenic dREG bidirectionals	8624
Part of Tfit master merge?	True
Part of dREG master merge?	True