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SRR5085738 Sample ID 2671
| Paper identifier | Williamson2017uv |
| SRP accession | SRP094802 |
| GEO accession | GSE91010 |
| Samples | SRR5085738 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MRC5VA |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| treatment | ultraviolet C (15 J/m^2) | -1501 s | -1500 s | 1 s |
| Pipeline info and software versions | |
| Sample notes | No documented irradiation duration, arbitrarily called 1 second |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 4 |
| Raw read length | 51 |
| Read depth after trimming | 55,151,115 |
| Duplication proportion | 0.36474 |
| Proportion reads mapped | 0.8993 |
| Exon/intron ratio | 8.24694 |
| Unique read proportion | 0.7875 |
| Total # Tfit bidirectionals | 42506 |
| # Promoter Tfit bidirectionals | 7972 |
| # Intronic Tfit bidirectionals | 19710 |
| # Intergenic Tfit bidirectionals | 9640 |
| Total # dREG bidirectionals | 30077 |
| # Promoter dREG bidirectionals | 5217 |
| # Intronic dREG bidirectionals | 16009 |
| # Intergenic dREG bidirectionals | 6340 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |