DBNascent | Samples

SRR5085738 Sample ID 2670

**Data sources**
Paper identifier	Williamson2017uv
SRP	SRP094802
Samples	SRR5085738

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	197 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MRC5VA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	DRB (100 microM)	-235 min	-25 min	210 min
treatment	ultraviolet C (15 J/m^2)	-1501 s	-1500 s	1 s

**Extended notes**
Pipeline info and software versions
Sample notes	No documented irradiation duration, arbitrarily called 1 second
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	4
Raw read length	51
Read depth after trimming	55,151,115
Duplication proportion	0.36474
Proportion reads mapped	0.8993
Exon/intron ratio	8.24694
Unique read proportion	0.7875

**Bidirectionals**
Total # Tfit bidirectionals	42506
# Promoter Tfit bidirectionals	7972
# Intronic Tfit bidirectionals	19710
# Intergenic Tfit bidirectionals	9640
Total # dREG bidirectionals	30077
# Promoter dREG bidirectionals	5217
# Intronic dREG bidirectionals	16009
# Intergenic dREG bidirectionals	6340
Part of Tfit master merge?	True
Part of dREG master merge?	True