DBNascent | Samples

SRR5085894 Sample ID 2673

**Data sources**
Paper identifier	Williamson2017uv
SRP accession	SRP094806
GEO accession	GSE91011
Samples	SRR5085894

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	165 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	802 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MRC5VA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	101
Read depth after trimming	41,262,328
Duplication proportion	0.27802
Proportion reads mapped	0.9446
Exon/intron ratio	4.68514
Unique read proportion	0.81341

**Bidirectionals**
Total # Tfit bidirectionals	27407
# Promoter Tfit bidirectionals	10947
# Intronic Tfit bidirectionals	10476
# Intergenic Tfit bidirectionals	4559
Total # dREG bidirectionals	18423
# Promoter dREG bidirectionals	6578
# Intronic dREG bidirectionals	7386
# Intergenic dREG bidirectionals	3497
Part of Tfit master merge?	True
Part of dREG master merge?	True