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SRR5085897 Sample ID 2676
Paper identifier | Williamson2017uv |
SRP accession | SRP094806 |
GEO accession | GSE91011 |
Samples | SRR5085897 |
QC score | 1 |
Replicate | 1 |
Protocol | GRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | True |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 135 Mb |
Stranded gene read counts | TXT file | 1 Mb |
Unstranded bidirectional read counts | TXT file | 21 Mb |
Tfit bidirectional regions | BED file | 2 Mb |
dREG bidirectional regions | BED file | 626 Kb |
All data files | ZIP archive |
Organism | H. sapiens |
Sample type | cell line |
Cell type | MRC5VA |
Clone/Individual | |
Strain | |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | ultraviolet C (15 J/m^2) | -28801 s | -28800 s | 1 s |
Pipeline info and software versions | |
Sample notes | No documented irradiation duration, arbitrarily called 1 second |
Analysis notes |
Sample QC score | 1 |
Sample NRO score | 2 |
Raw read length | 101 |
Read depth after trimming | 36,823,805 |
Duplication proportion | 0.35624 |
Proportion reads mapped | 0.9427 |
Exon/intron ratio | 4.88481 |
Unique read proportion | 0.72885 |
Total # Tfit bidirectionals | 23449 |
# Promoter Tfit bidirectionals | 9173 |
# Intronic Tfit bidirectionals | 9391 |
# Intergenic Tfit bidirectionals | 3058 |
Total # dREG bidirectionals | 14372 |
# Promoter dREG bidirectionals | 5780 |
# Intronic dREG bidirectionals | 5648 |
# Intergenic dREG bidirectionals | 2147 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |