SRR5085897 Sample ID 2676

Data sources
Paper identifier Williamson2017uv
SRP accession SRP094806
GEO accession GSE91011
Samples SRR5085897
Technical details
QC score 1
Replicate 1
Protocol GRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 135 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 2 Mb
dREG bidirectional regions BED file 626 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type MRC5VA
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment ultraviolet C (15 J/m^2) -28801 s -28800 s 1 s
Extended notes
Pipeline info and software versions
Sample notes No documented irradiation duration, arbitrarily called 1 second
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 2
Raw read length 101
Read depth after trimming 36,823,805
Duplication proportion 0.35624
Proportion reads mapped 0.9427
Exon/intron ratio 4.88481
Unique read proportion 0.72885
Bidirectionals
Total # Tfit bidirectionals 23449
# Promoter Tfit bidirectionals 9173
# Intronic Tfit bidirectionals 9391
# Intergenic Tfit bidirectionals 3058
Total # dREG bidirectionals 14372
# Promoter dREG bidirectionals 5780
# Intronic dREG bidirectionals 5648
# Intergenic dREG bidirectionals 2147
Part of Tfit master merge? True
Part of dREG master merge? True