DBNascent | Samples

SRR5085898 Sample ID 2676

**Data sources**
Paper identifier	Williamson2017uv
SRP	SRP094806
Samples	SRR5085898

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	194 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	767 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MRC5VA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	ultraviolet C (15 J/m^2)	-36001 s	-36000 s	1 s

**Extended notes**
Pipeline info and software versions
Sample notes	No documented irradiation duration, arbitrarily called 1 second
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	101
Read depth after trimming	52,728,822
Duplication proportion	0.34928
Proportion reads mapped	0.9415
Exon/intron ratio	5.13768
Unique read proportion	0.77332

**Bidirectionals**
Total # Tfit bidirectionals	26290
# Promoter Tfit bidirectionals	10102
# Intronic Tfit bidirectionals	10004
# Intergenic Tfit bidirectionals	4123
Total # dREG bidirectionals	17572
# Promoter dREG bidirectionals	6088
# Intronic dREG bidirectionals	7202
# Intergenic dREG bidirectionals	3233
Part of Tfit master merge?	True
Part of dREG master merge?	True