DBNascent | Samples

SRR5085900 Sample ID 2679

**Data sources**
Paper identifier	Williamson2017uv
SRP accession	SRP094806
GEO accession	GSE91011
Samples	SRR5085900

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	217 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	990 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MRC5VA
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	ultraviolet C (15 J/m^2)	-86401 s	-86400 s	1 s

**Extended notes**
Pipeline info and software versions
Sample notes	No documented irradiation duration, arbitrarily called 1 second
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	101
Read depth after trimming	56,844,981
Duplication proportion	0.31525
Proportion reads mapped	0.9382
Exon/intron ratio	5.63908
Unique read proportion	0.8001

**Bidirectionals**
Total # Tfit bidirectionals	34926
# Promoter Tfit bidirectionals	12956
# Intronic Tfit bidirectionals	12603
# Intergenic Tfit bidirectionals	7396
Total # dREG bidirectionals	22652
# Promoter dREG bidirectionals	6912
# Intronic dREG bidirectionals	9247
# Intergenic dREG bidirectionals	5227
Part of Tfit master merge?	True
Part of dREG master merge?	True