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SRR5087852 Sample ID 1406
| Paper identifier | Kwon2017locus |
| SRP accession | SRP094765 |
| GEO accession | GSE91043 |
| Samples | SRR5087852 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 35 Mb |
| Stranded gene read counts | TXT file | 912 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 830 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | N2a |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | GRO-seq protocol and data not noted in publication - just GEO |
| Analysis notes | Preseq required separate run with -D flag |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 10,837,014 |
| Duplication proportion | 0.53595 |
| Proportion reads mapped | 0.8205 |
| Exon/intron ratio | 2.62983 |
| Unique read proportion | 0.43574 |
| Total # Tfit bidirectionals | 29236 |
| # Promoter Tfit bidirectionals | 7256 |
| # Intronic Tfit bidirectionals | 8947 |
| # Intergenic Tfit bidirectionals | 10203 |
| Total # dREG bidirectionals | 19289 |
| # Promoter dREG bidirectionals | 6719 |
| # Intronic dREG bidirectionals | 4594 |
| # Intergenic dREG bidirectionals | 6385 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |