DBNascent | Samples

SRR5087852 Sample ID 1406

**Data sources**
Paper identifier	Kwon2017locus
SRP accession	SRP094765
GEO accession	GSE91043
Samples	SRR5087852

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	35 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	830 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	N2a
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	GRO-seq protocol and data not noted in publication - just GEO
Analysis notes	Preseq required separate run with -D flag

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	10,837,014
Duplication proportion	0.53595
Proportion reads mapped	0.8205
Exon/intron ratio	2.62983
Unique read proportion	0.43574

**Bidirectionals**
Total # Tfit bidirectionals	29236
# Promoter Tfit bidirectionals	7256
# Intronic Tfit bidirectionals	8947
# Intergenic Tfit bidirectionals	10203
Total # dREG bidirectionals	19289
# Promoter dREG bidirectionals	6719
# Intronic dREG bidirectionals	4594
# Intergenic dREG bidirectionals	6385
Part of Tfit master merge?	True
Part of dREG master merge?	True