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SRR5100757 Sample ID 1838
| Paper identifier | Meyerswallen2017xx |
| SRP accession | SRP095019 |
| GEO accession | GSE92318 |
| Samples | SRR5100757 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | ChRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 63 Mb |
| Organism | C. lupus familiaris |
| Sample type | tissue |
| Cell type | embryonic gonad |
| Clone/Individual | individual C3556 |
| Strain | |
| Genotype | XX; XX DSD insertion +/+ |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | ChRO-seq; Cites Kwak2013precise for library prep; d39 embryo |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 33,137,653 |
| Duplication proportion | 0.8174 |
| Proportion reads mapped | 0.6075 |
| Exon/intron ratio | 6.86865 |
| Unique read proportion | 0.28893 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |