DBNascent | Samples

SRR5100759 Sample ID 1840

**Data sources**
Paper identifier	Meyerswallen2017xx
SRP accession	SRP095019
GEO accession	GSE92318
Samples	SRR5100759

**Technical details**
QC score	3
Replicate	2
Protocol	ChRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	C. lupus familiaris
Sample type	tissue
Cell type	embryonic gonad
Clone/Individual	individual C3639
Strain
Genotype	XY; XX DSD insertion +/+
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	ChRO-seq; Cites Kwak2013precise for library prep; d39 embryo
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	3
Raw read length	76
Read depth after trimming	29,530,210
Duplication proportion	0.68409
Proportion reads mapped	0.6201
Exon/intron ratio	5.74924
Unique read proportion	0.41956

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False