Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5100763 Sample ID 1844
| Paper identifier | Meyerswallen2017xx |
| SRP accession | SRP095019 |
| GEO accession | GSE92318 |
| Samples | SRR5100763 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | ChRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 67 Mb |
| Organism | C. lupus familiaris |
| Sample type | tissue |
| Cell type | embryonic gonad |
| Clone/Individual | individual C3682 |
| Strain | |
| Genotype | XX; XX DSD insertion +/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | ChRO-seq; Cites Kwak2013precise for library prep; d39 embryo |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 4 |
| Raw read length | 76 |
| Read depth after trimming | 33,556,555 |
| Duplication proportion | 0.80947 |
| Proportion reads mapped | 0.6146 |
| Exon/intron ratio | 7.12759 |
| Unique read proportion | 0.31007 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |