DBNascent | Samples

SRR5109935 Sample ID 336

**Data sources**
Paper identifier	Bouvyliivrand2017analysis
SRP accession	SRP095085
GEO accession	GSE92375
Samples	SRR5109935

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	54 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	739 Kb
dREG bidirectional regions	BED file	264 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	22,057,129
Duplication proportion	0.62525
Proportion reads mapped	0.9318
Exon/intron ratio	4.75899
Unique read proportion	0.38726

**Bidirectionals**
Total # Tfit bidirectionals	8532
# Promoter Tfit bidirectionals	3758
# Intronic Tfit bidirectionals	3495
# Intergenic Tfit bidirectionals	299
Total # dREG bidirectionals	6151
# Promoter dREG bidirectionals	3816
# Intronic dREG bidirectionals	1711
# Intergenic dREG bidirectionals	590
Part of Tfit master merge?	True
Part of dREG master merge?	True