DBNascent | Samples

SRR5109947 Sample ID 347

**Data sources**
Paper identifier	Bouvyliivrand2017analysis
SRP accession	SRP095085
GEO accession	GSE92375
Samples	SRR5109947

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	96 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1013 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	THP1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	20,911,857
Duplication proportion	0.24966
Proportion reads mapped	0.911
Exon/intron ratio	2.8113
Unique read proportion	0.79354

**Bidirectionals**
Total # Tfit bidirectionals	25584
# Promoter Tfit bidirectionals	9956
# Intronic Tfit bidirectionals	10229
# Intergenic Tfit bidirectionals	5658
Total # dREG bidirectionals	23507
# Promoter dREG bidirectionals	9313
# Intronic dREG bidirectionals	9287
# Intergenic dREG bidirectionals	5245
Part of Tfit master merge?	True
Part of dREG master merge?	True