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SRR5109947 Sample ID 347
| Paper identifier | Bouvyliivrand2017analysis |
| SRP accession | SRP095085 |
| GEO accession | GSE92375 |
| Samples | SRR5109947 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 96 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1013 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | THP1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 20,911,857 |
| Duplication proportion | 0.24966 |
| Proportion reads mapped | 0.911 |
| Exon/intron ratio | 2.8113 |
| Unique read proportion | 0.79354 |
| Total # Tfit bidirectionals | 25584 |
| # Promoter Tfit bidirectionals | 9956 |
| # Intronic Tfit bidirectionals | 10229 |
| # Intergenic Tfit bidirectionals | 5658 |
| Total # dREG bidirectionals | 23507 |
| # Promoter dREG bidirectionals | 9313 |
| # Intronic dREG bidirectionals | 9287 |
| # Intergenic dREG bidirectionals | 5245 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |