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SRR513510 Sample ID 864
| Paper identifier | Fuda2012fcp1 |
| SRP accession | SRP013761 |
| GEO accession | GSE38748 |
| Samples | SRR513510 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 37 Mb |
| Stranded gene read counts | TXT file | 716 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dsRNA Fcp1 (10 microg/mL) | -5 day | 0 day | 5 day |
| Pipeline info and software versions | |
| Sample notes | GEO protocols consistent with GRO-seq, and data included in paper, but no mention of protocol in paper |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 59 |
| Read depth after trimming | 10,314,808 |
| Duplication proportion | 0.44728 |
| Proportion reads mapped | 0.466 |
| Exon/intron ratio | 1.14956 |
| Unique read proportion | 0.46585 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |