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SRR5144956 Sample ID 2851
| Paper identifier | Zhu2017comprehensive |
| SRP accession | SRP096029 |
| GEO accession | GSE93127 |
| Samples | SRR5144956 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 28 Mb |
| Stranded gene read counts | TXT file | 903 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 381 Kb |
| dREG bidirectional regions | BED file | 82 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ECOMG |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol withdrawal | -5 day | 0 day | 5 day |
| Pipeline info and software versions | |
| Sample notes | Pluripotency maintained with 1 microM 17-beta-estradiol, differentiation to neutrophils induced by withdrawal |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 37,889,429 |
| Duplication proportion | 0.86884 |
| Proportion reads mapped | 0.6871 |
| Exon/intron ratio | 2.51627 |
| Unique read proportion | 0.14165 |
| Total # Tfit bidirectionals | 4495 |
| # Promoter Tfit bidirectionals | 915 |
| # Intronic Tfit bidirectionals | 2321 |
| # Intergenic Tfit bidirectionals | 308 |
| Total # dREG bidirectionals | 1901 |
| # Promoter dREG bidirectionals | 515 |
| # Intronic dREG bidirectionals | 653 |
| # Intergenic dREG bidirectionals | 495 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |