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SRR5144957 Sample ID 2852

**Data sources**
Paper identifier	Zhu2017comprehensive
SRP accession	SRP096029
GEO accession	GSE93127
Samples	SRR5144957

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	28 Mb
Stranded gene read counts	TXT file	903 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	309 Kb
dREG bidirectional regions	BED file	84 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ECOMG
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Pluripotency maintained with 1 microM 17-beta-estradiol, differentiation to neutrophils induced by withdrawal
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	12,952,709
Duplication proportion	0.60012
Proportion reads mapped	0.6232
Exon/intron ratio	4.85574
Unique read proportion	0.3929

**Bidirectionals**
Total # Tfit bidirectionals	3646
# Promoter Tfit bidirectionals	687
# Intronic Tfit bidirectionals	1817
# Intergenic Tfit bidirectionals	228
Total # dREG bidirectionals	1954
# Promoter dREG bidirectionals	404
# Intronic dREG bidirectionals	613
# Intergenic dREG bidirectionals	746
Part of Tfit master merge?	True
Part of dREG master merge?	True