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SRR514959 Sample ID 2238
| Paper identifier | Schoeberl2012biased |
| SRP accession | SRP013774 |
| GEO accession | GSE38768 |
| Samples | SRR514959 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 26 Mb |
| Organism | T. thermophila |
| Sample type | tissue |
| Cell type | micronucleus |
| Clone/Individual | |
| Strain | B2086 x CU428 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | mating | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 93,716,865 |
| Duplication proportion | 0.9964 |
| Proportion reads mapped | 0.7263 |
| Exon/intron ratio | 0.96067 |
| Unique read proportion | 0.01987 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |