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SRR5150535 Sample ID 1929
| Paper identifier | Ngoc2017human |
| SRP accession | SRP093742 |
| GEO accession | GSE90035 |
| Samples | SRR5150535 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 41 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 346 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | GRO-seq control sample; Small RNA Library Prep Set (New England Biolabs) was used for final library preparation with modifications as described in Hetzel et al. 2016 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 8,256,611 |
| Duplication proportion | 0.2954 |
| Proportion reads mapped | 0.8978 |
| Exon/intron ratio | 2.4767 |
| Unique read proportion | 0.66921 |
| Total # Tfit bidirectionals | 15920 |
| # Promoter Tfit bidirectionals | 5955 |
| # Intronic Tfit bidirectionals | 6682 |
| # Intergenic Tfit bidirectionals | 2544 |
| Total # dREG bidirectionals | 8045 |
| # Promoter dREG bidirectionals | 4879 |
| # Intronic dREG bidirectionals | 2255 |
| # Intergenic dREG bidirectionals | 1102 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |