DBNascent | Samples

SRR5150541 Sample ID 968

**Data sources**
Paper identifier	Horibata2018erpositive
SRP accession	SRP096173
GEO accession	GSE93229
Samples	SRR5150541

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	126 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	Clone B7 (tamoxifen sensitive)
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	75
Read depth after trimming	33,429,432
Duplication proportion	0.34725
Proportion reads mapped	0.86
Exon/intron ratio	4.47619
Unique read proportion	0.71767

**Bidirectionals**
Total # Tfit bidirectionals	31089
# Promoter Tfit bidirectionals	15018
# Intronic Tfit bidirectionals	11215
# Intergenic Tfit bidirectionals	5638
Total # dREG bidirectionals	25124
# Promoter dREG bidirectionals	9330
# Intronic dREG bidirectionals	10506
# Intergenic dREG bidirectionals	4835
Part of Tfit master merge?	True
Part of dREG master merge?	True