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SRR5150548 Sample ID 975
| Paper identifier | Horibata2018erpositive |
| SRP accession | SRP096173 |
| GEO accession | GSE93229 |
| Samples | SRR5150548 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | Clone B7 (tamoxifen sensitive) |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | GDNF (10 ng/mL) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 28,511,525 |
| Duplication proportion | 0.4393 |
| Proportion reads mapped | 0.9149 |
| Exon/intron ratio | 5.5483 |
| Unique read proportion | 0.63317 |
| Total # Tfit bidirectionals | 30593 |
| # Promoter Tfit bidirectionals | 17267 |
| # Intronic Tfit bidirectionals | 10045 |
| # Intergenic Tfit bidirectionals | 4452 |
| Total # dREG bidirectionals | 22096 |
| # Promoter dREG bidirectionals | 9825 |
| # Intronic dREG bidirectionals | 8322 |
| # Intergenic dREG bidirectionals | 3882 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |