DBNascent | Samples

SRR5150550 Sample ID 977

**Data sources**
Paper identifier	Horibata2018erpositive
SRP accession	SRP096173
GEO accession	GSE93229
Samples	SRR5150550

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	97 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	883 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	Clone C11 (tamoxifen sensitive)
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	GDNF (10 ng/mL)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	25,633,146
Duplication proportion	0.38895
Proportion reads mapped	0.912
Exon/intron ratio	4.88427
Unique read proportion	0.67432

**Bidirectionals**
Total # Tfit bidirectionals	29003
# Promoter Tfit bidirectionals	15775
# Intronic Tfit bidirectionals	9979
# Intergenic Tfit bidirectionals	4162
Total # dREG bidirectionals	20128
# Promoter dREG bidirectionals	8800
# Intronic dREG bidirectionals	7834
# Intergenic dREG bidirectionals	3232
Part of Tfit master merge?	True
Part of dREG master merge?	True