SRR5150552 Sample ID 979

Data sources
Paper identifier Horibata2018erpositive
SRP accession SRP096173
GEO accession GSE93229
Samples SRR5150552
Technical details
QC score 1
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental control
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 103 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 946 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type MCF7
Clone/Individual Clone G11 (tamoxifen resistant)
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 3
Raw read length 76
Read depth after trimming 27,738,754
Duplication proportion 0.38856
Proportion reads mapped 0.8858
Exon/intron ratio 5.03812
Unique read proportion 0.68079
Bidirectionals
Total # Tfit bidirectionals 31097
# Promoter Tfit bidirectionals 16602
# Intronic Tfit bidirectionals 10397
# Intergenic Tfit bidirectionals 4969
Total # dREG bidirectionals 21530
# Promoter dREG bidirectionals 8940
# Intronic dREG bidirectionals 8136
# Intergenic dREG bidirectionals 3904
Part of Tfit master merge? True
Part of dREG master merge? True