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SRR5150554 Sample ID 981
| Paper identifier | Horibata2018erpositive |
| SRP accession | SRP096173 |
| GEO accession | GSE93229 |
| Samples | SRR5150554 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | Clone G11 (tamoxifen resistant) |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | GDNF (10 ng/mL) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 26,292,025 |
| Duplication proportion | 0.41954 |
| Proportion reads mapped | 0.8969 |
| Exon/intron ratio | 5.51213 |
| Unique read proportion | 0.64108 |
| Total # Tfit bidirectionals | 30286 |
| # Promoter Tfit bidirectionals | 16601 |
| # Intronic Tfit bidirectionals | 10268 |
| # Intergenic Tfit bidirectionals | 4521 |
| Total # dREG bidirectionals | 22098 |
| # Promoter dREG bidirectionals | 9709 |
| # Intronic dREG bidirectionals | 8392 |
| # Intergenic dREG bidirectionals | 3912 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |