SRR5150554 Sample ID 981

Data sources
Paper identifier Horibata2018erpositive
SRP accession SRP096173
GEO accession GSE93229
Samples SRR5150554
Technical details
QC score 1
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 94 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 969 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type MCF7
Clone/Individual Clone G11 (tamoxifen resistant)
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment GDNF (10 ng/mL) -24 hr 0 hr 1 day
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 3
Raw read length 76
Read depth after trimming 26,292,025
Duplication proportion 0.41954
Proportion reads mapped 0.8969
Exon/intron ratio 5.51213
Unique read proportion 0.64108
Bidirectionals
Total # Tfit bidirectionals 30286
# Promoter Tfit bidirectionals 16601
# Intronic Tfit bidirectionals 10268
# Intergenic Tfit bidirectionals 4521
Total # dREG bidirectionals 22098
# Promoter dREG bidirectionals 9709
# Intronic dREG bidirectionals 8392
# Intergenic dREG bidirectionals 3912
Part of Tfit master merge? True
Part of dREG master merge? True