DBNascent | Samples

SRR5195271 Sample ID 14

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097614
GEO accession	GSE93938
Samples	SRR5195271

**Technical details**
QC score	1
Replicate	2
Protocol	Bru-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	82 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	540 Kb
dREG bidirectional regions	BED file	261 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cortical neuron
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-32 min	0 min	32 min

**Extended notes**
Pipeline info and software versions
Sample notes	BrU-seq
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	29,858,591
Duplication proportion	0.314
Proportion reads mapped	0.7332
Exon/intron ratio	1.88992
Unique read proportion	0.71019

**Bidirectionals**
Total # Tfit bidirectionals	6331
# Promoter Tfit bidirectionals	2736
# Intronic Tfit bidirectionals	2134
# Intergenic Tfit bidirectionals	244
Total # dREG bidirectionals	6055
# Promoter dREG bidirectionals	2758
# Intronic dREG bidirectionals	1440
# Intergenic dREG bidirectionals	917
Part of Tfit master merge?	True
Part of dREG master merge?	True