Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5195277 Sample ID 20
| Paper identifier | Agarwal2021kdm1a |
| SRP accession | SRP097614 |
| GEO accession | GSE93938 |
| Samples | SRR5195277 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | Bru-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 120 Mb |
| Stranded gene read counts | TXT file | 923 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 609 Kb |
| dREG bidirectional regions | BED file | 381 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | cortical neuron |
| Clone/Individual | |
| Strain | |
| Genotype | shRNA Lsd1 B (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | bromouridine (2 mM) | -32 min | 0 min | 32 min |
| Pipeline info and software versions | |
| Sample notes | BrU-seq |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 41,242,242 |
| Duplication proportion | 0.24707 |
| Proportion reads mapped | 0.7245 |
| Exon/intron ratio | 2.02877 |
| Unique read proportion | 0.79684 |
| Total # Tfit bidirectionals | 7096 |
| # Promoter Tfit bidirectionals | 2771 |
| # Intronic Tfit bidirectionals | 2419 |
| # Intergenic Tfit bidirectionals | 481 |
| Total # dREG bidirectionals | 8835 |
| # Promoter dREG bidirectionals | 3514 |
| # Intronic dREG bidirectionals | 2531 |
| # Intergenic dREG bidirectionals | 1456 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |