DBNascent | Samples

SRR5195549 Sample ID 22

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097628
GEO accession	GSE93951
Samples	SRR5195549

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	114 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129S1/SvImJ x C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate info not clear
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	65,346,215
Duplication proportion	0.55258
Proportion reads mapped	0.6134
Exon/intron ratio	2.34
Unique read proportion	0.52534

**Bidirectionals**
Total # Tfit bidirectionals	44799
# Promoter Tfit bidirectionals	14246
# Intronic Tfit bidirectionals	13045
# Intergenic Tfit bidirectionals	14118
Total # dREG bidirectionals	33163
# Promoter dREG bidirectionals	8363
# Intronic dREG bidirectionals	10507
# Intergenic dREG bidirectionals	11780
Part of Tfit master merge?	True
Part of dREG master merge?	True