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SRR5195549 Sample ID 22
| Paper identifier | Agarwal2021kdm1a |
| SRP accession | SRP097628 |
| GEO accession | GSE93951 |
| Samples | SRR5195549 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 114 Mb |
| Stranded gene read counts | TXT file | 925 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | 129S1/SvImJ x C57BL/6J |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate info not clear |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 65,346,215 |
| Duplication proportion | 0.55258 |
| Proportion reads mapped | 0.6134 |
| Exon/intron ratio | 2.34 |
| Unique read proportion | 0.52534 |
| Total # Tfit bidirectionals | 44799 |
| # Promoter Tfit bidirectionals | 14246 |
| # Intronic Tfit bidirectionals | 13045 |
| # Intergenic Tfit bidirectionals | 14118 |
| Total # dREG bidirectionals | 33163 |
| # Promoter dREG bidirectionals | 8363 |
| # Intronic dREG bidirectionals | 10507 |
| # Intergenic dREG bidirectionals | 11780 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |