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SRR5195550 Sample ID 23
| Paper identifier | Agarwal2021kdm1a |
| SRP accession | SRP097628 |
| GEO accession | GSE93951 |
| Samples | SRR5195550 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 92 Mb |
| Stranded gene read counts | TXT file | 923 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | 129S1/SvImJ x C57BL/6J |
| Genotype | Smcx -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate info not clear |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 49,055,826 |
| Duplication proportion | 0.54273 |
| Proportion reads mapped | 0.6054 |
| Exon/intron ratio | 2.30218 |
| Unique read proportion | 0.57291 |
| Total # Tfit bidirectionals | 39299 |
| # Promoter Tfit bidirectionals | 12154 |
| # Intronic Tfit bidirectionals | 11963 |
| # Intergenic Tfit bidirectionals | 12059 |
| Total # dREG bidirectionals | 28194 |
| # Promoter dREG bidirectionals | 8249 |
| # Intronic dREG bidirectionals | 8431 |
| # Intergenic dREG bidirectionals | 9579 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |