DBNascent | Samples

SRR5195550 Sample ID 23

**Data sources**
Paper identifier	Agarwal2021kdm1a
SRP accession	SRP097628
GEO accession	GSE93951
Samples	SRR5195550

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	92 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain	129S1/SvImJ x C57BL/6J
Genotype	Smcx -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate info not clear
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	49,055,826
Duplication proportion	0.54273
Proportion reads mapped	0.6054
Exon/intron ratio	2.30218
Unique read proportion	0.57291

**Bidirectionals**
Total # Tfit bidirectionals	39299
# Promoter Tfit bidirectionals	12154
# Intronic Tfit bidirectionals	11963
# Intergenic Tfit bidirectionals	12059
Total # dREG bidirectionals	28194
# Promoter dREG bidirectionals	8249
# Intronic dREG bidirectionals	8431
# Intergenic dREG bidirectionals	9579
Part of Tfit master merge?	True
Part of dREG master merge?	True