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SRR5195551 Sample ID 24
Paper identifier | Agarwal2021kdm1a |
SRP accession | SRP097628 |
GEO accession | GSE93951 |
Samples | SRR5195551 |
QC score | 1 |
Replicate | 2 |
Protocol | GRO-seq |
Library prep | circularization |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 94 Mb |
Stranded gene read counts | TXT file | 922 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 3 Mb |
dREG bidirectional regions | BED file | 1 Mb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | cell line |
Cell type | ESC |
Clone/Individual | |
Strain | 129S1/SvImJ x C57BL/6J |
Genotype | Smcx -/- |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | Replicate info not clear |
Analysis notes |
Sample QC score | 1 |
Sample NRO score | 1 |
Raw read length | 50 |
Read depth after trimming | 48,393,618 |
Duplication proportion | 0.49378 |
Proportion reads mapped | 0.5919 |
Exon/intron ratio | 2.32308 |
Unique read proportion | 0.57818 |
Total # Tfit bidirectionals | 40483 |
# Promoter Tfit bidirectionals | 13401 |
# Intronic Tfit bidirectionals | 11776 |
# Intergenic Tfit bidirectionals | 12079 |
Total # dREG bidirectionals | 28811 |
# Promoter dREG bidirectionals | 8344 |
# Intronic dREG bidirectionals | 8738 |
# Intergenic dREG bidirectionals | 9566 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |