DBNascent | Samples

SRR5227979 Sample ID 1650

**Data sources**
Paper identifier	Liu2017transcriptional
SRP accession	SRP098814
GEO accession	GSE94479
Samples	SRR5227979

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	195 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	962 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	charcoal-stripped FBS (10%)	-3 day	0 day	3 day

**Extended notes**
Pipeline info and software versions
Sample notes	G0/G1 phase
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	49
Read depth after trimming	27,746,479
Duplication proportion	0.15783
Proportion reads mapped	0.9322
Exon/intron ratio	2.50212
Unique read proportion	0.74882

**Bidirectionals**
Total # Tfit bidirectionals	41280
# Promoter Tfit bidirectionals	11988
# Intronic Tfit bidirectionals	19013
# Intergenic Tfit bidirectionals	7874
Total # dREG bidirectionals	22100
# Promoter dREG bidirectionals	6744
# Intronic dREG bidirectionals	9683
# Intergenic dREG bidirectionals	4687
Part of Tfit master merge?	True
Part of dREG master merge?	True