DBNascent | Samples

SRR5227981 Sample ID 1652

**Data sources**
Paper identifier	Liu2017transcriptional
SRP accession	SRP098814
GEO accession	GSE94479
Samples	SRR5227981

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	189 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	747 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	thymidine (2 mM)	-17 hr	0 hr	17 hr
treatment	thymidine (2 mM)	-44 hr	-26 hr	18 hr

**Extended notes**
Pipeline info and software versions
Sample notes	S phase
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	49
Read depth after trimming	26,101,998
Duplication proportion	0.12205
Proportion reads mapped	0.9473
Exon/intron ratio	2.02929
Unique read proportion	0.75913

**Bidirectionals**
Total # Tfit bidirectionals	32007
# Promoter Tfit bidirectionals	9425
# Intronic Tfit bidirectionals	15119
# Intergenic Tfit bidirectionals	5898
Total # dREG bidirectionals	17227
# Promoter dREG bidirectionals	5598
# Intronic dREG bidirectionals	7341
# Intergenic dREG bidirectionals	3748
Part of Tfit master merge?	True
Part of dREG master merge?	True