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SRR5227982 Sample ID 1653
| Paper identifier | Liu2017transcriptional |
| SRP accession | SRP098814 |
| GEO accession | GSE94479 |
| Samples | SRR5227982 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | thymidine (2 mM) | -17 hr | 0 hr | 17 hr |
| treatment | thymidine (2 mM) | -44 hr | -26 hr | 18 hr |
| Pipeline info and software versions | |
| Sample notes | S phase |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 49 |
| Read depth after trimming | 35,132,693 |
| Duplication proportion | 0.12585 |
| Proportion reads mapped | 0.9514 |
| Exon/intron ratio | 2.21541 |
| Unique read proportion | 0.77055 |
| Total # Tfit bidirectionals | 33138 |
| # Promoter Tfit bidirectionals | 10362 |
| # Intronic Tfit bidirectionals | 15353 |
| # Intergenic Tfit bidirectionals | 5868 |
| Total # dREG bidirectionals | 20582 |
| # Promoter dREG bidirectionals | 6372 |
| # Intronic dREG bidirectionals | 8963 |
| # Intergenic dREG bidirectionals | 4338 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |