DBNascent | Samples

SRR5253460 Sample ID 1949

**Data sources**
Paper identifier	Niskanen2018endothelial
SRP accession	SRP099610
GEO accession	GSE94872
Samples	SRR5253460

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	46 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	553 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	15,337,452
Duplication proportion	0.57085
Proportion reads mapped	0.9449
Exon/intron ratio	3.20408
Unique read proportion	0.45335

**Bidirectionals**
Total # Tfit bidirectionals	19995
# Promoter Tfit bidirectionals	6837
# Intronic Tfit bidirectionals	8665
# Intergenic Tfit bidirectionals	4323
Total # dREG bidirectionals	12883
# Promoter dREG bidirectionals	6240
# Intronic dREG bidirectionals	4383
# Intergenic dREG bidirectionals	2517
Part of Tfit master merge?	True
Part of dREG master merge?	True