DBNascent | Samples

SRR5253465 Sample ID 1952

**Data sources**
Paper identifier	Niskanen2018endothelial
SRP accession	SRP099610
GEO accession	GSE94872
Samples	SRR5253465

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	22 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	341 Kb
dREG bidirectional regions	BED file	126 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	6,161,964
Duplication proportion	0.70098
Proportion reads mapped	0.9295
Exon/intron ratio	2.96894
Unique read proportion	0.22049

**Bidirectionals**
Total # Tfit bidirectionals	3911
# Promoter Tfit bidirectionals	1532
# Intronic Tfit bidirectionals	1542
# Intergenic Tfit bidirectionals	584
Total # dREG bidirectionals	2929
# Promoter dREG bidirectionals	2048
# Intronic dREG bidirectionals	700
# Intergenic dREG bidirectionals	371
Part of Tfit master merge?	True
Part of dREG master merge?	True