DBNascent | Samples

SRR5253469 Sample ID 1954

**Data sources**
Paper identifier	Niskanen2018endothelial
SRP accession	SRP099610
GEO accession	GSE94872
Samples	SRR5253469

**Technical details**
QC score	2
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	63 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	994 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	16,581,884
Duplication proportion	0.41972
Proportion reads mapped	0.9216
Exon/intron ratio	2.65666
Unique read proportion	0.61504

**Bidirectionals**
Total # Tfit bidirectionals	29191
# Promoter Tfit bidirectionals	11702
# Intronic Tfit bidirectionals	11925
# Intergenic Tfit bidirectionals	6101
Total # dREG bidirectionals	23061
# Promoter dREG bidirectionals	9881
# Intronic dREG bidirectionals	9431
# Intergenic dREG bidirectionals	4356
Part of Tfit master merge?	True
Part of dREG master merge?	True