DBNascent | Samples

SRR5274988 Sample ID 1898

**Data sources**
Paper identifier	Murakami2017dynamic
SRP accession	SRP100437
GEO accession	GSE95122
Samples	SRR5274988

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	20 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	768 Kb
dREG bidirectional regions	BED file	228 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-231
Clone/Individual
Strain
Genotype	Esr1 L540Q (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min

**Extended notes**
Pipeline info and software versions
Sample notes	L540Q mutant cannot bind SRCs proteins
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	17,030,797
Duplication proportion	0.6361
Proportion reads mapped	0.2575
Exon/intron ratio	2.73563
Unique read proportion	0.32851

**Bidirectionals**
Total # Tfit bidirectionals	8883
# Promoter Tfit bidirectionals	4384
# Intronic Tfit bidirectionals	3282
# Intergenic Tfit bidirectionals	1266
Total # dREG bidirectionals	5318
# Promoter dREG bidirectionals	3509
# Intronic dREG bidirectionals	1438
# Intergenic dREG bidirectionals	626
Part of Tfit master merge?	True
Part of dREG master merge?	True