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SRR5298791 Sample ID 1017
| Paper identifier | Incarnato2017vivo |
| SRP accession | SRP100931 |
| GEO accession | GSE95567 |
| Samples | SRR5298791 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | other |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | Yes |
| TDF visualization file | TDF file | 5 Mb |
| Organism | E. coli |
| Sample type | organism |
| Cell type | whole bacteria |
| Clone/Individual | |
| Strain | K-12 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | rnpB SPET-seq (in vitro); This is structural data from in vitro nascent transcription - not useful for comparison purposes |
| Analysis notes | Unstranded and odd (this sample alone was an in vitro assay and not included in tech reps); picard didn't work |
| Sample QC score | 5 |
| Sample NRO score | 5 |
| Raw read length | 70 |
| Read depth after trimming | 21,012,077 |
| Duplication proportion | 0.97332 |
| Proportion reads mapped | 0.8914 |
| Exon/intron ratio | 17.6135 |
| Unique read proportion | 0.02194 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |