DBNascent | Samples

SRR5313794 Sample ID 1656

**Data sources**
Paper identifier	Liu2018arabidopsis
SRP accession	SRP101403
GEO accession	GSE95301
Samples	SRR5313794

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	12 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	A. thaliana
Sample type	tissue
Cell type	seedling
Clone/Individual
Strain	Col-0
Genotype	Ago1 mut
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	mutation designated ago1-36
Analysis notes

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	50
Read depth after trimming	51,617,923
Duplication proportion	0.9523
Proportion reads mapped	0.7164
Exon/intron ratio	2.5
Unique read proportion	0.07736

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False