DBNascent | Samples

SRR5350747 Sample ID 2305

**Data sources**
Paper identifier	Slobodin2017transcription
SRP accession	SRP102022
GEO accession	GSE96717
Samples	SRR5350747

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	983 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	BJ
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	65
Read depth after trimming	31,172,254
Duplication proportion	0.42567
Proportion reads mapped	0.9936
Exon/intron ratio	3.02564
Unique read proportion	0.74391

**Bidirectionals**
Total # Tfit bidirectionals	38521
# Promoter Tfit bidirectionals	14038
# Intronic Tfit bidirectionals	16198
# Intergenic Tfit bidirectionals	7635
Total # dREG bidirectionals	22598
# Promoter dREG bidirectionals	8300
# Intronic dREG bidirectionals	9200
# Intergenic dREG bidirectionals	4930
Part of Tfit master merge?	True
Part of dREG master merge?	True