DBNascent | Samples

SRR5350748 Sample ID 2306

**Data sources**
Paper identifier	Slobodin2017transcription
SRP accession	SRP102023
GEO accession	GSE96718
Samples	SRR5350748

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	14 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	782 Kb
dREG bidirectional regions	BED file	193 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	5
Raw read length	51
Read depth after trimming	9,720,429
Duplication proportion	0.8822
Proportion reads mapped	0.9895
Exon/intron ratio	32.7077
Unique read proportion	0.11575

**Bidirectionals**
Total # Tfit bidirectionals	9157
# Promoter Tfit bidirectionals	2522
# Intronic Tfit bidirectionals	2155
# Intergenic Tfit bidirectionals	118
Total # dREG bidirectionals	4496
# Promoter dREG bidirectionals	1680
# Intronic dREG bidirectionals	1145
# Intergenic dREG bidirectionals	158
Part of Tfit master merge?	True
Part of dREG master merge?	True