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SRR5359618 Sample ID 2085
| Paper identifier | Phanstiel2017static |
| SRP accession | SRP102154 |
| GEO accession | GSE96800 |
| Samples | SRR5359618 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 16 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 111 Kb |
| dREG bidirectional regions | BED file | 45 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | THP1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | phorbol myristate acetate (100 nM) | -72 hr | 0 hr | 3 day |
| Pipeline info and software versions | |
| Sample notes | Data/protocol not mentioned in paper but grouped with data that were included |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 101 |
| Read depth after trimming | 15,285,995 |
| Duplication proportion | 0.81885 |
| Proportion reads mapped | 0.8511 |
| Exon/intron ratio | 3.80695 |
| Unique read proportion | 0.08063 |
| Total # Tfit bidirectionals | 1276 |
| # Promoter Tfit bidirectionals | 368 |
| # Intronic Tfit bidirectionals | 610 |
| # Intergenic Tfit bidirectionals | 85 |
| Total # dREG bidirectionals | 1029 |
| # Promoter dREG bidirectionals | 272 |
| # Intronic dREG bidirectionals | 412 |
| # Intergenic dREG bidirectionals | 270 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |