Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5364061 Sample ID 835
| Paper identifier | Franco2018enhancer |
| SRP accession | SRP102238 |
| GEO accession | GSE96859 |
| Samples | SRR5364061 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 96 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicates unclear - states that rep3 and rep4 are tech reps of rep1 and rep2, respectively, yet no rep4 exists for this cell type |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 26,781,324 |
| Duplication proportion | 0.43601 |
| Proportion reads mapped | 0.8703 |
| Exon/intron ratio | 4.24365 |
| Unique read proportion | 0.64665 |
| Total # Tfit bidirectionals | 26596 |
| # Promoter Tfit bidirectionals | 2137 |
| # Intronic Tfit bidirectionals | 18492 |
| # Intergenic Tfit bidirectionals | 3206 |
| Total # dREG bidirectionals | 27120 |
| # Promoter dREG bidirectionals | 1504 |
| # Intronic dREG bidirectionals | 19545 |
| # Intergenic dREG bidirectionals | 3603 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |