DBNascent | Samples

SRR5364061 Sample ID 835

**Data sources**
Paper identifier	Franco2018enhancer
SRP accession	SRP102238
GEO accession	GSE96859
Samples	SRR5364061

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	96 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicates unclear - states that rep3 and rep4 are tech reps of rep1 and rep2, respectively, yet no rep4 exists for this cell type
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	50
Read depth after trimming	26,781,324
Duplication proportion	0.43601
Proportion reads mapped	0.8703
Exon/intron ratio	4.24365
Unique read proportion	0.64665

**Bidirectionals**
Total # Tfit bidirectionals	26596
# Promoter Tfit bidirectionals	2137
# Intronic Tfit bidirectionals	18492
# Intergenic Tfit bidirectionals	3206
Total # dREG bidirectionals	27120
# Promoter dREG bidirectionals	1504
# Intronic dREG bidirectionals	19545
# Intergenic dREG bidirectionals	3603
Part of Tfit master merge?	True
Part of dREG master merge?	True