DBNascent | Samples

SRR5364072 Sample ID 836

**Data sources**
Paper identifier	Franco2018enhancer
SRP accession	SRP102238
GEO accession	GSE96859
Samples	SRR5364072

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	153 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	3 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	UACC812
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicates unclear - states that rep3 and rep4 are tech reps of rep1 and rep2, respectively, yet no rep4 exists for this cell type
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	51
Read depth after trimming	60,399,502
Duplication proportion	0.60482
Proportion reads mapped	0.8693
Exon/intron ratio	1.08837
Unique read proportion	0.68534

**Bidirectionals**
Total # Tfit bidirectionals	52979
# Promoter Tfit bidirectionals	5368
# Intronic Tfit bidirectionals	33491
# Intergenic Tfit bidirectionals	11057
Total # dREG bidirectionals	72935
# Promoter dREG bidirectionals	5505
# Intronic dREG bidirectionals	45934
# Intergenic dREG bidirectionals	18216
Part of Tfit master merge?	True
Part of dREG master merge?	True