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SRR5364303 Sample ID 643
| Paper identifier | Dukler2017nascent |
| SRP accession | SRP102240 |
| GEO accession | GSE96869 |
| Samples | SRR5364303 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 132 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 955 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | None | None | None |
| Pipeline info and software versions | |
| Sample notes | No time duration given for DMSO but does specify it was put on cells |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 31,057,459 |
| Duplication proportion | 0.29351 |
| Proportion reads mapped | 0.8945 |
| Exon/intron ratio | 3.68416 |
| Unique read proportion | 0.79316 |
| Total # Tfit bidirectionals | 27144 |
| # Promoter Tfit bidirectionals | 13485 |
| # Intronic Tfit bidirectionals | 9761 |
| # Intergenic Tfit bidirectionals | 4603 |
| Total # dREG bidirectionals | 21866 |
| # Promoter dREG bidirectionals | 7812 |
| # Intronic dREG bidirectionals | 8981 |
| # Intergenic dREG bidirectionals | 4482 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |