Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5364306 Sample ID 646
| Paper identifier | Dukler2017nascent |
| SRP accession | SRP102240 |
| GEO accession | GSE96869 |
| Samples | SRR5364306 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 123 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 966 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | celastrol (3 microM) | -10 min | 0 min | 10 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 28,626,305 |
| Duplication proportion | 0.28518 |
| Proportion reads mapped | 0.8989 |
| Exon/intron ratio | 3.74727 |
| Unique read proportion | 0.79632 |
| Total # Tfit bidirectionals | 26022 |
| # Promoter Tfit bidirectionals | 12937 |
| # Intronic Tfit bidirectionals | 10043 |
| # Intergenic Tfit bidirectionals | 3864 |
| Total # dREG bidirectionals | 22158 |
| # Promoter dREG bidirectionals | 8403 |
| # Intronic dREG bidirectionals | 9659 |
| # Intergenic dREG bidirectionals | 3929 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |